Package: grainscape 0.4.4

grainscape: Landscape Connectivity, Habitat, and Protected Area Networks

Given a landscape resistance surface, creates minimum planar graph (Fall et al. (2007) <doi:10.1007/s10021-007-9038-7>) and grains of connectivity (Galpern et al. (2012) <doi:10.1111/j.1365-294X.2012.05677.x>) models that can be used to calculate effective distances for landscape connectivity at multiple scales. Documentation is provided by several vignettes, and a paper (Chubaty, Galpern & Doctolero (2020) <doi:10.1111/2041-210X.13350>).

Authors:Paul Galpern [aut, cph], Sam Doctolero [aut], Alex M Chubaty [aut, cre]

grainscape_0.4.4.tar.gz
grainscape_0.4.4.zip(r-4.5)grainscape_0.4.4.zip(r-4.4)grainscape_0.4.4.zip(r-4.3)
grainscape_0.4.4.tgz(r-4.4-x86_64)grainscape_0.4.4.tgz(r-4.4-arm64)grainscape_0.4.4.tgz(r-4.3-x86_64)grainscape_0.4.4.tgz(r-4.3-arm64)
grainscape_0.4.4.tar.gz(r-4.5-noble)grainscape_0.4.4.tar.gz(r-4.4-noble)
grainscape_0.4.4.tgz(r-4.4-emscripten)grainscape_0.4.4.tgz(r-4.3-emscripten)
grainscape.pdf |grainscape.html✨
grainscape/json (API)
NEWS

# Install 'grainscape' in R:

install.packages('grainscape', repos = c('https://achubaty.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/achubaty/grainscape/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

habitat-connectivity landscape-connectivity spatial-graphs

22 exports 19 stars 2.21 score 44 dependencies 16 scripts 670 downloads

Last updated 1 years agofrom:883e4d0578. Checks:OK: 8 NOTE: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 13 2024
R-4.5-win-x86_64	OK	Aug 13 2024
R-4.5-linux-x86_64	NOTE	Aug 13 2024
R-4.4-win-x86_64	OK	Aug 13 2024
R-4.4-mac-x86_64	OK	Aug 13 2024
R-4.4-mac-aarch64	OK	Aug 13 2024
R-4.3-win-x86_64	OK	Aug 13 2024
R-4.3-mac-x86_64	OK	Aug 13 2024
R-4.3-mac-aarch64	OK	Aug 13 2024

Exports:corridor distance export ggGS GOC grain graphdf gsGOC gsGOCCorridor gsGOCDistance gsGOCPoint gsGOCVisualize gsGraphDataFrame gsMPG gsMPGstitch MPG patchFilter plot point show theme_grainscape threshold

Dependencies:class classInt cli colorspace cpp11 DBI e1071 fansi farver ggplot2 glue gtable igraph isoband KernSmooth labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig proxy R6 raster RColorBrewer Rcpp rlang s2 scales sf sp terra tibble units utf8 vctrs viridisLite withr wk

Modelling, visualization and analysis with the grainscape package

Paul Galpern^[Department of Biological Sciences, University of Calgary, AB, Canada], Alex M. Chubaty^[FOR-CAST Research & Analytics, Calgary, AB, Canada]

Rendered fromgrainscape_vignette.Rmdusingknitr::rmarkdownon Aug 13 2024.

Last update: 2023-04-20
Started: 2017-07-27

Calculating the minimum planar graph and generating Voronoi tessellations

Sam Doctolero and Alex M Chubaty

Rendered fromMPG_algorithm.Rmdusingknitr::rmarkdownon Aug 13 2024.

Last update: 2023-04-20
Started: 2016-08-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Landscape Connectivity, Habitat, and Protected Area Networks	grainscape-package grainscape
Extract or Replace Parts of an Object	$ $,goc-method $,mpg-method $<- $<-,goc-method $<-,mpg-method
Visualize corridors between two points using a grains of connectivity (GOC)	corridor corridor,goc-method
The 'corridor' class	corridor-class
Find the grains of connectivity network distance	distance distance,goc,matrix-method distance,goc,numeric-method distance,goc,SpatialPoints-method
Export spatial data from MPG and GOC models	export export,goc-method export,grain-method export,mpg-method
Prepare data in 'MPG' and 'grain' objects for use with 'ggplot2'	ggGS ggGS,goc-method ggGS,grain-method ggGS,list-method ggGS,mpg-method ggGS,RasterLayer-method
Produce a grains of connectivity model at multiple scales (patch-based or lattice GOC)	GOC GOC,mpg-method
The 'goc' class	goc-class
Extract a grain of connectivity (GOC) tessellation at a given scale	grain grain,goc-method
The 'grain' class	grain-class
Test maps included with 'grainscape'	grainscape-maps
Produce a 'data.frame' containing the structure and associated attributes	graphdf graphdf,goc-method graphdf,grain-method graphdf,igraph-method graphdf,list-method graphdf,mpg-method
Deprecated functions	gsGOC gsGOCCorridor gsGOCDistance gsGOCPoint gsGOCVisualize gsGraphDataFrame gsMPG visualize
'grainscape': Defunct	gsMPGstitch
Extract a minimum planar graph (MPG) model from a landscape resistance surface	MPG MPG,RasterLayer,numeric-method MPG,RasterLayer,RasterLayer-method
The 'mpg' class	mpg-class
Filter out patches smaller than a specified area	patchFilter patchFilter,RasterLayer-method
Plot quick visualizations of 'grainscape' objects	plot,corridor,ANY-method plot,grain,ANY-method plot,mpg,ANY-method
Identify the polygons containing locations in grains of connectivity (GOC) tessellations	point point,goc-method
Show a 'grainscape' object	show,corridor-method show,goc-method show,grain-method
A 'ggplot2' theme for 'grainscape'	theme_grainscape
Produce a minimum planar graph (MPG) at multiple scales	threshold threshold,mpg-method